S corporation payroll for one employee, usually the primary manager or director of the company, is often paid as the employee's annual salary. Why Do S Corporation Owners Need to be on Payroll? Steps in Preparing an S Corporation Payroll for One Employee Prepare All of your End-of-the-Year Payroll Tax Forms 8. ![]() Take Care of any Shortfalls in your Taxes 7. ![]() Prepare your State and Federal Payroll Tax Returns 6. Record the Payroll Transactions in an Accounting Program 5. ![]() Prepare your Federal Quarterly Payroll Tax Returns 4. Steps in Preparing an S Corporation Payroll for One Employee 2.
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